If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ), 'gf_id' => 'HOM05D000760', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000760' ), 'data_identifier' => 'HOM05D000760', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000760', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '769', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p27940' => 'bna', 'A02p33330' => 'bna', 'A02p36310' => 'bna', 'A03p36770' => 'bna', 'A05p38440' => 'bna', 'A06p06290' => 'bna', 'A06p17950' => 'bna', 'A06p43200' => 'bna', 'A07p35740' => 'bna', 'A08p27450' => 'bna', 'A08p28760' => 'bna', 'A08p32140' => 'bna', 'A08p34470' => 'bna', 'A09p03950' => 'bna', 'A09p18850' => 'bna', 'A09p40110' => 'bna', 'A09p62560' => 'bna', 'A09p65360' => 'bna', 'Aa31LG1G1020' => 'aar', 'Aa31LG1G5440' => 'aar', 'Aa31LG2G4130' => 'aar', 'Aa31LG2G7250' => 'aar', 'Aa31LG4G11350' => 'aar', 'Aa31LG7G5860' => 'aar', 'Aa31LG7G8410' => 'aar', 'Aa31LG9G14300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.1462' => 'aag', 'Actinidia00208' => 'ach', 'Actinidia12304' => 'ach', 'Actinidia17561' => 'ach', 'Actinidia17742' => 'ach', 'Actinidia19935' => 'ach', 'Actinidia26145' => 'ach', 'Actinidia26232' => 'ach', 'Actinidia31965' => 'ach', 'Actinidia33221' => 'ach', 'Ah.02g129410' => 'amhyb', 'Ah.03g134740' => 'amhyb', 'Ah.13g072650' => 'amhyb', 'Ah.13g076560' => 'amhyb', 'AL1G20110' => 'aly', 'AL1G25850' => 'aly', 'AL1G35100' => 'aly', 'AL1G39024' => 'aly', 'AL1G67200' => 'aly', 'AL2G28570' => 'aly', 'AL3G51910' => 'aly', 'AL5G12930' => 'aly', 'AL5G18960' => 'aly', 'Aqoxy3G03476' => 'aox', 'Aqoxy6G00182' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2VE3ZY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3T4GA9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7921HN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AIAA57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H81T82' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY2GY6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5A1YJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KH7DJH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QAS32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TL1U9P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WN52E6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z6MEWL' => 'arhy', 'AT1G09580' => 'ath', 'AT1G14010' => 'ath', 'AT1G21900' => 'ath', 'AT1G26690' => 'ath', 'AT1G57620' => 'ath', 'AT1G69460' => 'ath', 'AT2G03040' => 'ath', 'AT2G03290' => 'ath', 'AT3G10780' => 'ath', 'AT3G29070' => 'ath', 'ATR0193G019' => 'atr', 'ATR0564G126' => 'atr', 'Atru.chr11.1724' => 'acertr', 'Atru.chr13.1422' => 'acertr', 'Atru.chr6.652' => 'acertr', 'Atru.chr6.658' => 'acertr', 'Atru.chr8.317' => 'acertr', 'AUR62004726' => 'cqu', 'AUR62005836' => 'cqu', 'AUR62014270' => 'cqu', 'AUR62023646' => 'cqu', 'AUR62024486' => 'cqu', 'AUR62026071' => 'cqu', 'AUR62032830' => 'cqu', 'AUR62042256' => 'cqu', 'BcaB03g11883' => 'bca', 'BcaB03g11884' => 'bca', 'BcaB03g12002' => 'bca', 'BcaB03g13117' => 'bca', 'BcaB03g13304' => 'bca', 'BcaB03g14250' => 'bca', 'BcaB03g15891' => 'bca', 'BcaB04g18609' => 'bca', 'BcaB04g19501' => 'bca', 'BcaB04g20170' => 'bca', 'BcaB04g20171' => 'bca', 'BcaB04g21176' => 'bca', 'BcaB07g30099' => 'bca', 'BcaB07g30307' => 'bca', 'BcaB07g31146' => 'bca', 'BcaB07g32187' => 'bca', 'BcaB08g34360' => 'bca', 'BcaC01g01753' => 'bca', 'BcaC01g04080' => 'bca', 'BcaC01g04158' => 'bca', 'BcaC03g17191' => 'bca', 'BcaC03g17192' => 'bca', 'BcaC03g17197' => 'bca', 'BcaC03g17202' => 'bca', 'BcaC03g17549' => 'bca', 'BcaC04g22086' => 'bca', 'BcaC04g23849' => 'bca', 'BcaC05g26107' => 'bca', 'BcaC05g26396' => 'bca', 'BcaC05g29433' => 'bca', 'BcaC06g30877' => 'bca', 'BcaC06g31189' => 'bca', 'BcaC06g33668' => 'bca', 'BcaC06g34006' => 'bca', 'BcaC07g38520' => 'bca', 'BcaC07g38715' => 'bca', 'BcaC07g39127' => 'bca', 'BcaC07g41866' => 'bca', 'BcaC09g49532' => 'bca', 'BNapus_Darmor_BZH_scaffold_273p00010' => 'bna', 'BolC1t03510H' => 'bol', 'BolC1t05354H' => 'bol', 'BolC2t11210H' => 'bol', 'BolC2t11214H' => 'bol', 'BolC2t11217H' => 'bol', 'BolC2t11576H' => 'bol', 'BolC3t16713H' => 'bol', 'BolC3t19523H' => 'bol', 'BolC5t29515H' => 'bol', 'BolC5t30785H' => 'bol', 'BolC5t31164H' => 'bol', 'BolC5t34390H' => 'bol', 'BolC6t39386H' => 'bol', 'BolC7t43891H' => 'bol', 'BolC7t44319H' => 'bol', 'BolC8t48932H' => 'bol', 'BolC8t49270H' => 'bol', 'BolC8t49756H' => 'bol', 'BolC8t52162H' => 'bol', 'BolC8t52470H' => 'bol', 'BolC9t53348H' => 'bol', 'BolC9t55283H' => 'bol', 'BraA01t02931Z' => 'bra', 'BraA01t04222Z' => 'bra', 'BraA02t08355Z' => 'bra', 'BraA02t08630Z' => 'bra', 'BraA03t12839Z' => 'bra', 'BraA05t22634Z' => 'bra', 'BraA06t23839Z' => 'bra', 'BraA06t24886Z' => 'bra', 'BraA06t27208Z' => 'bra', 'BraA07t31161Z' => 'bra', 'BraA08t34686Z' => 'bra', 'BraA08t34805Z' => 'bra', 'BraA08t35137Z' => 'bra', 'BraA08t35359Z' => 'bra', 'BraA09t36032Z' => 'bra', 'BraA09t37506Z' => 'bra', 'BraA09t39510Z' => 'bra', 'BraA09t41619Z' => 'bra', 'BraA09t41882Z' => 'bra', 'C01p35510' => 'bna', 'C02p51190' => 'bna', 'C02p51240' => 'bna', 'C02p51290' => 'bna', 'C02p55280' => 'bna', 'C03p44460' => 'bna', 'C03p45240' => 'bna', 'C03p72280' => 'bna', 'C05p07630' => 'bna', 'C05p20860' => 'bna', 'C05p24300' => 'bna', 'C05p57340' => 'bna', 'C06p40460' => 'bna', 'C07p33780' => 'bna', 'C07p37980' => 'bna', 'C08p13020' => 'bna', 'C08p16450' => 'bna', 'C08p21160' => 'bna', 'C08p46120' => 'bna', 'C08p49330' => 'bna', 'C09p04170' => 'bna', 'C09p23630' => 'bna', 'CAN.G127.5' => 'can', 'CAN.G1396.3' => 'can', 'CAN.G1396.4' => 'can', 'CAN.G1577.15' => 'can', 'CAN.G314.5' => 'can', 'CAN.G53.44' => 'can', 'CAN.G964.15' => 'can', 'CANSAT11G0121' => 'cansat', 'CANSAT25G1668' => 'cansat', 'CANSAT64G0527' => 'cansat', 'CANSAT64G1285' => 'cansat', 'CARHR009560' => 'chi', 'CARHR014380' => 'chi', 'CARHR022250' => 'chi', 'CARHR025270' => 'chi', 'CARHR054540' => 'chi', 'CARHR054560' => 'chi', 'CARHR054590' => 'chi', 'CARHR054650' => 'chi', 'CARHR062390' => 'chi', 'CARHR085350' => 'chi', 'CARHR152250' => 'chi', 'Carub.0001s0893' => 'cru', 'Carub.0001s1370' => 'cru', 'Carub.0001s2137' => 'cru', 'Carub.0001s2432' => 'cru', 'Carub.0002s0701' => 'cru', 'Carub.0002s1607' => 'cru', 'Carub.0003s1001' => 'cru', 'Carub.0005s0221' => 'cru', 'Carub.0005s0779' => 'cru', 'Ca_00077_v3' => 'car', 'Ca_04846_v3' => 'car', 'Ca_04850_v3' => 'car', 'Ca_05217_v3' => 'car', 'Ca_06790_v3' => 'car', 'Ca_15199_v3' => 'car', 'Ca_17818_v3' => 'car', 'Ca_23882_v3' => 'car', 'CBR_g53677' => 'cbr', 'Cc02_g22470' => 'ccan', 'Cc10_g10940' => 'ccan', 'Cc11_g12650' => 'ccan', 'CDE07G1858' => 'cde', 'CDE11G0715' => 'cde', 'CDE12G0321' => 'cde', 'Cfa005524' => 'cfa', 'Cfa008934' => 'cfa', 'Cfa015999' => 'cfa', 'Cfa023260' => 'cfa', 'Cfa025711' => 'cfa', 'Ciclev10001035m.g' => 'ccl', 'Ciclev10002263m.g' => 'ccl', 'Ciclev10012731m.g' => 'ccl', 'Ciclev10032741m.g' => 'ccl', 'CiPaw.03G024000' => 'cil', 'CiPaw.04G015100' => 'cil', 'CiPaw.05G044100' => 'cil', 'CiPaw.05G130100' => 'cil', 'CiPaw.06G028800' => 'cil', 'CiPaw.06G088200' => 'cil', 'CiPaw.06G147500' => 'cil', 'ClCG05G009720' => 'cla', 'ClCG09G014220' => 'cla', 'ClCG09G018000' => 'cla', 'ClCG09G022050' => 'cla', 'COL.COLO4_10346' => 'col', 'COL.COLO4_12211' => 'col', 'COL.COLO4_17868' => 'col', 'COL.COLO4_27981' => 'col', 'Cpa.g.sc1.60' => 'cpa', 'Cpa.g.sc113.62' => 'cpa', 'Cpa.g.sc14.112' => 'cpa', 'Cpa.g.sc36.44' => 'cpa', 'Cre07.g315900' => 'cre', 'CsaV3_3G018860' => 'csa', 'CsaV3_5G025090' => 'csa', 'CsaV3_5G038230' => 'csa', 'CsaV3_6G037340' => 'csa', 'CSS0005433' => 'camsi', 'CSS0006138' => 'camsi', 'CSS0010470' => 'camsi', 'CSS0013571' => 'camsi', 'CSS0014687' => 'camsi', 'CSS0023627' => 'camsi', 'CSS0026624' => 'camsi', 'CSS0029987' => 'camsi', 'DCAR_005557' => 'dca', 'DCAR_007174' => 'dca', 'DCAR_014101' => 'dca', 'DCAR_017410' => 'dca', 'DCAR_025384' => 'dca', 'DCAR_027438' => 'dca', 'DCAR_029254' => 'dca', 'DCAR_030995' => 'dca', 'Dinv05463' => 'din', 'Dinv11508' => 'din', 'Dinv16686' => 'din', 'Dinv19365' => 'din', 'Dinv24280' => 'din', 'Dinv27335' => 'din', 'Dinv33781' => 'din', 'Dinv33784' => 'din', 'Dinv34090' => 'din', 'Dinv40401' => 'din', 'Duzib041G0132' => 'dzi', 'Duzib052G0018' => 'dzi', 'Duzib132G0370' => 'dzi', 'Duzib147G1255' => 'dzi', 'Duzib187G0121' => 'dzi', 'Duzib248G0425' => 'dzi', 'Duzib251G0628' => 'dzi', 'Duzib264G0123' => 'dzi', 'Duzib268G0007' => 'dzi', 'ECA232G0478' => 'eca', 'ECA233G0459' => 'eca', 'ECA234G3923' => 'eca', 'ECA234G4697' => 'eca', 'ECA238G4634' => 'eca', 'ECA240G1035' => 'eca', 'ECA247G1737' => 'eca', 'EL10Ac2g03015' => 'bvu', 'EL10Ac3g07124' => 'bvu', 'EL10Ac4g09483' => 'bvu', 'EL10Ac4g09486' => 'bvu', 'EL10Ac6g13258' => 'bvu', 'EL10Ac6g14074' => 'bvu', 'Eucgr.B03200' => 'egr', 'Eucgr.F04362' => 'egr', 'Eucgr.G00581' => 'egr', 'Eucgr.G02477' => 'egr', 'Eucgr.I01963' => 'egr', 'Eucgr.I01969' => 'egr', 'Eucgr.I02723' => 'egr', 'FAN02G1801' => 'fan', 'FAN04G0024' => 'fan', 'FAN04G1591' => 'fan', 'FAN05G1643' => 'fan', 'FAN07G1130' => 'fan', 'FAN08G0422' => 'fan', 'FAN09G3554' => 'fan', 'FAN12G2078' => 'fan', 'FAN13G3052' => 'fan', 'FAN14G2946' => 'fan', 'FAN16G0341' => 'fan', 'FAN18G2632' => 'fan', 'FAN22G1405' => 'fan', 'FvH4_4g30790' => 'fve', 'FvH4_5g29520' => 'fve', 'FvH4_6g48050' => 'fve', 'Glyma.02G111000' => 'gma', 'Glyma.04G251300' => 'gma', 'Glyma.05G169500' => 'gma', 'Glyma.06G111400' => 'gma', 'Glyma.07G228100' => 'gma', 'Glyma.08G127800' => 'gma', 'Glyma.08G186000' => 'gma', 'Glyma.13G061200' => 'gma', 'Glyma.13G081400' => 'gma', 'Glyma.14G147800' => 'gma', 'Glyma.15G046800' => 'gma', 'Glyma.15G247000' => 'gma', 'Glyma.18G262100' => 'gma', 'Glyma.19G025300' => 'gma', 'Glyma.20G031400' => 'gma', 'Gohir.A03G102350' => 'ghi', 'Gohir.A04G127200' => 'ghi', 'Gohir.A05G305400' => 'ghi', 'Gohir.A05G368600' => 'ghi', 'Gohir.A06G043100' => 'ghi', 'Gohir.A09G013600' => 'ghi', 'Gohir.A12G031800' => 'ghi', 'Gohir.A13G085200' => 'ghi', 'Gohir.A13G175150' => 'ghi', 'Gohir.D02G127200' => 'ghi', 'Gohir.D04G046700' => 'ghi', 'Gohir.D04G172000' => 'ghi', 'Gohir.D05G305300' => 'ghi', 'Gohir.D06G043900' => 'ghi', 'Gohir.D09G012200' => 'ghi', 'Gohir.D12G040500' => 'ghi', 'Gohir.D13G077800' => 'ghi', 'Gohir.D13G181100' => 'ghi', 'Gorai.005G142800' => 'gra', 'Gorai.006G014200' => 'gra', 'Gorai.008G042200' => 'gra', 'Gorai.009G325400' => 'gra', 'Gorai.010G049000' => 'gra', 'Gorai.012G051900' => 'gra', 'Gorai.012G161000' => 'gra', 'Gorai.013G089000' => 'gra', 'Gorai.013G206600' => 'gra', 'GSVIVG01003215001' => 'vvi', 'GSVIVG01008892001' => 'vvi', 'GSVIVG01011454001' => 'vvi', 'GSVIVG01022966001' => 'vvi', 'HanXRQChr01g0029841' => 'han', 'HanXRQChr03g0071731' => 'han', 'HanXRQChr04g0107381' => 'han', 'HanXRQChr07g0199681' => 'han', 'HanXRQChr08g0210641' => 'han', 'HanXRQChr09g0246091' => 'han', 'HanXRQChr09g0264241' => 'han', 'HanXRQChr09g0272011' => 'han', 'HanXRQChr09g0272021' => 'han', 'HanXRQChr12g0379081' => 'han', 'HanXRQChr12g0379091' => 'han', 'HanXRQChr16g0530061' => 'han', 'HanXRQChr16g0530071' => 'han', 'HanXRQChr17g0545361' => 'han', 'HanXRQChr17g0570871' => 'han', 'Haze_00467' => 'cav', 'Haze_01667' => 'cav', 'Haze_11963' => 'cav', 'Haze_14502' => 'cav', 'Hma1.2p1_0186F.1_g081580' => 'hma', 'Hma1.2p1_0217F.1_g092020' => 'hma', 'Hma1.2p1_0354F.1_g133850' => 'hma', 'Hma1.2p1_0357F.1_g134280' => 'hma', 'Hma1.2p1_0409F.1_g146750' => 'hma', 'HPP92_010978' => 'vpl', 'HPP92_013337' => 'vpl', 'HPP92_016738' => 'vpl', 'HPP92_016905' => 'vpl', 'Hund16849' => 'sun', 'Hund25211' => 'sun', 'Hund25212' => 'sun', 'Hund27030' => 'sun', 'Lalb_Chr05g0220231' => 'lal', 'Lalb_Chr06g0175231' => 'lal', 'Lalb_Chr08g0241511' => 'lal', 'Lalb_Chr09g0329181' => 'lal', 'Lalb_Chr10g0101871' => 'lal', 'Lalb_Chr11g0065811' => 'lal', 'Lalb_Chr16g0385671' => 'lal', 'Lalb_Chr17g0337161' => 'lal', 'Lalb_Chr17g0343841' => 'lal', 'Lalb_Chr20g0123441' => 'lal', 'Lj1g0002192' => 'lja', 'Lj1g0004416' => 'lja', 'Lj2g0003205' => 'lja', 'Lj2g0009261' => 'lja', 'Lj2g0013973' => 'lja', 'Lj2g0020569' => 'lja', 'Lj3A1034G79' => 'lonja', 'Lj4g0008526' => 'lja', 'Lj4g0016181' => 'lja', 'Lj5A252T50' => 'lonja', 'Lj6A784T68' => 'lonja', 'Lj6g0023763' => 'lja', 'Lj7A338G34' => 'lonja', 'Lj9A306T62' => 'lonja', 'Lju41A9T73' => 'lonja', 'Lsat_1_v5_gn_1_12301' => 'lsa', 'Lsat_1_v5_gn_2_90040' => 'lsa', 'Lsat_1_v5_gn_3_51881' => 'lsa', 'Lsat_1_v5_gn_4_10701' => 'lsa', 'Lsat_1_v5_gn_4_170340' => 'lsa', 'Lsat_1_v5_gn_5_109320' => 'lsa', 'Lsat_1_v5_gn_8_48801' => 'lsa', 'Lsat_1_v5_gn_8_49801' => 'lsa', 'Lsat_1_v5_gn_9_118381' => 'lsa', 'Manes.01G033100' => 'mes', 'Manes.02G048400' => 'mes', 'Manes.02G161900' => 'mes', 'Manes.05G105700' => 'mes', 'Manes.07G015500' => 'mes', 'Manes.10G129300' => 'mes', 'Manes.18G075700' => 'mes', 'Mapoly0005s0169' => 'mpo', 'MBI03_g33026_MAGBIO' => 'mbi', 'MBI06_g20719_MAGBIO' => 'mbi', 'MBI13_g02165_MAGBIO' => 'mbi', 'MBI13_g44671_MAGBIO' => 'mbi', 'MCO01G427' => 'mco', 'MD00G1214100' => 'mdo', 'MD08G1228900' => 'mdo', 'MD08G1229000' => 'mdo', 'MD09G1054500' => 'mdo', 'MD15G1422800' => 'mdo', 'MD15G1422900' => 'mdo', 'MD16G1067700' => 'mdo', 'MD17G1052400' => 'mdo', 'Medtr2g007210' => 'mtr', 'Medtr3g072600' => 'mtr', 'Medtr4g082315' => 'mtr', 'Medtr5g042260' => 'mtr', 'Medtr5g042270' => 'mtr', 'Medtr5g042300' => 'mtr', 'Medtr5g042320' => 'mtr', 'Medtr5g058140' => 'mtr', 'Medtr6g012770' => 'mtr', 'Medtr7g011490' => 'mtr', 'Medtr8g088940' => 'mtr', 'Medtr8g088980' => 'mtr', 'MELO3C002981.2' => 'cme', 'MELO3C014382.2' => 'cme', 'MELO3C019479.2' => 'cme', 'MELO3C022007.2' => 'cme', 'MELO3C033124.2' => 'cme', 'Migut.B00839' => 'egut', 'Migut.C01142' => 'egut', 'Migut.E00072' => 'egut', 'Migut.L01251' => 'egut', 'Migut.N01042' => 'egut', 'Migut.N03293' => 'egut', 'MSTRG.13429' => 'ama', 'MSTRG.16522' => 'ama', 'MSTRG.24160' => 'ama', 'MSTRG.25388' => 'ama', 'MSTRG.724' => 'ama', 'MSTRG.7781' => 'ama', 'Nitab4.5_0000014g0140' => 'nta', 'Nitab4.5_0000118g0020' => 'nta', 'Nitab4.5_0000141g0050' => 'nta', 'Nitab4.5_0000391g0300' => 'nta', 'Nitab4.5_0000633g0170' => 'nta', 'Nitab4.5_0000633g0180' => 'nta', 'Nitab4.5_0000720g0080' => 'nta', 'Nitab4.5_0001086g0010' => 'nta', 'Nitab4.5_0001706g0050' => 'nta', 'Nitab4.5_0002245g0050' => 'nta', 'Nitab4.5_0002256g0050' => 'nta', 'Nitab4.5_0002798g0010' => 'nta', 'Nitab4.5_0003975g0020' => 'nta', 'Nitab4.5_0004690g0020' => 'nta', 'Nitab4.5_0004906g0040' => 'nta', 'Nitab4.5_0007420g0010' => 'nta', 'Nn1g08732' => 'nnu', 'Nn3g17317' => 'nnu', 'Nn4g23262' => 'nnu', 'Nn5g28207' => 'nnu', 'Nn5g28208' => 'nnu', 'Nn5g28209' => 'nnu', 'Nn5g28210' => 'nnu', 'Nn5g28213' => 'nnu', 'Nn5g28214' => 'nnu', 'Nn5g28223' => 'nnu', 'Oeu005764.1' => 'oeu', 'Oeu008892.1' => 'oeu', 'Oeu033983.1' => 'oeu', 'Oeu045942.2' => 'oeu', 'Oeu047943.1' => 'oeu', 'Oeu049823.1' => 'oeu', 'Oeu055100.1' => 'oeu', 'Oeu059431.1' => 'oeu', 'Oeu063745.1' => 'oeu', 'Os02g0768200' => 'osa', 'Os03g0328300' => 'osa', 'Os03g0376000' => 'osa', 'Os06g0210100' => 'osa', 'Os07g0632700' => 'osa', 'Os08g0469400' => 'osa', 'Os09g0453200' => 'osa', 'Peaxi162Scf00003g03827' => 'pax', 'Peaxi162Scf00011g00355' => 'pax', 'Peaxi162Scf00011g00365' => 'pax', 'Peaxi162Scf00051g00621' => 'pax', 'Peaxi162Scf00152g01332' => 'pax', 'Peaxi162Scf00187g01015' => 'pax', 'Peaxi162Scf00222g00239' => 'pax', 'Peaxi162Scf00911g00010' => 'pax', 'PGR004G2197' => 'pgr', 'PGR044G2702' => 'pgr', 'PGR102G0873' => 'pgr', 'PGR119G2561' => 'pgr', 'PGR142G0929' => 'pgr', 'PGR142G2487' => 'pgr', 'PGSC0003DMG400000912' => 'stu', 'PGSC0003DMG400002852' => 'stu', 'PGSC0003DMG400017561' => 'stu', 'PGSC0003DMG400017562' => 'stu', 'PGSC0003DMG400017563' => 'stu', 'PGSC0003DMG400023791' => 'stu', 'PGSC0003DMG400024300' => 'stu', 'PGSC0003DMG400028393' => 'stu', 'Phvul.002G169200' => 'pvu', 'Phvul.002G250200' => 'pvu', 'Phvul.004G031200' => 'pvu', 'Phvul.006G214400' => 'pvu', 'Phvul.008G038700' => 'pvu', 'Phvul.008G164700' => 'pvu', 'Phvul.009G123400' => 'pvu', 'Potri.001G210900' => 'ptr', 'Potri.002G085300' => 'ptr', 'Potri.003G019300' => 'ptr', 'Potri.004G127200' => 'ptr', 'Potri.008G090700' => 'ptr', 'Potri.010G164600' => 'ptr', 'Potri.017G086900' => 'ptr', 'Potri.018G145544' => 'ptr', 'Pp3c9_17580' => 'ppa', 'Pp3c9_20360' => 'ppa', 'PRCOL_00004286' => 'pco', 'Prupe.1G279100' => 'ppe', 'Prupe.1G568100' => 'ppe', 'Prupe.1G568200' => 'ppe', 'Prupe.3G264000' => 'ppe', 'Psat0s375g0080' => 'psa', 'Psat0s5685g0040' => 'psa', 'Psat1g071000' => 'psa', 'Psat1g224800' => 'psa', 'Psat2g078760' => 'psa', 'Psat2g126640' => 'psa', 'Psat2g126680' => 'psa', 'Psat2g126720' => 'psa', 'Psat2g126760' => 'psa', 'Psat2g126920' => 'psa', 'Psat3g199600' => 'psa', 'Psat7g061640' => 'psa', 'Psat7g156120' => 'psa', 'PSO017G2293' => 'pso', 'PSO063G1094' => 'pso', 'PSO170G4313' => 'pso', 'PSO339G2487' => 'pso', 'PSO384G2275' => 'pso', 'PSO478G5063' => 'pso', 'PSO528G0061' => 'pso', 'QL02p084782' => 'qlo', 'QL03p069597' => 'qlo', 'QL09p035517' => 'qlo', 'QL09p035523' => 'qlo', 'QL11p018468' => 'qlo', 'RcHm_v2.0_Chr1g0316241' => 'rch', 'RcHm_v2.0_Chr1g0316281' => 'rch', 'RcHm_v2.0_Chr2g0167341' => 'rch', 'RcHm_v2.0_Chr4g0439181' => 'rch', 'RcHm_v2.0_Chr7g0222471' => 'rch', 'Rhsim08G0071300' => 'rsi', 'Rhsim11G0129600' => 'rsi', 'Rhsim12G0079100' => 'rsi', 'Sabra01G0162900' => 'sbr', 'Sabra02G0066800' => 'sbr', 'Sabra03G0010800' => 'sbr', 'Sabra08G0068100' => 'sbr', 'Sabra10G0125000' => 'sbr', 'Sabra17G0076700' => 'sbr', 'SalBow5G2156' => 'sbo', 'SalBow6G0905' => 'sbo', 'SalBow6G3408' => 'sbo', 'SalBow7G1079' => 'sbo', 'SalBow7G2962' => 'sbo', 'SalBow7G3777' => 'sbo', 'SalBow8G2742' => 'sbo', 'Sc01g0001250' => 'sci', 'Sc01g0001290' => 'sci', 'Sc04g0007900' => 'sci', 'Sc11g0002130' => 'sci', 'Sc11g0004970' => 'sci', 'Sc23g0000760' => 'sci', 'Sed0001464' => 'sed', 'Sed0002406' => 'sed', 'Sed0003681' => 'sed', 'Sed0008171' => 'sed', 'Sed0011234' => 'sed', 'Sed0024041' => 'sed', 'Sed0024370' => 'sed', 'SEGI_08127' => 'sgi', 'SEGI_18710' => 'sgi', 'SEGI_24677' => 'sgi', 'SGA_v2.0_scaffold110G31299' => 'sas', 'SGA_v2.0_scaffold14G07008' => 'sas', 'SGA_v2.0_scaffold24G10469' => 'sas', 'SGA_v2.0_scaffold36G14422' => 'sas', 'SGA_v2.0_scaffold389G50547' => 'sas', 'SGA_v2.0_scaffold455G51907' => 'sas', 'SGA_v2.0_scaffold52G18975' => 'sas', 'SHI22748' => 'shi', 'SMO239G0144' => 'smo', 'SMO367G0686' => 'smo', 'Solyc01g010940.3' => 'sly', 'Solyc01g104220.3' => 'sly', 'Solyc04g005570.4' => 'sly', 'Solyc05g013130.3' => 'sly', 'Solyc06g060430.1' => 'sly', 'Solyc06g060440.2' => 'sly', 'Solyc06g060450.3' => 'sly', 'Solyc10g045640.2' => 'sly', 'Solyc11g013000.2' => 'sly', 'Sopen01g006780' => 'spe', 'Sopen01g046660' => 'spe', 'Sopen04g001610' => 'spe', 'Sopen05g007870' => 'spe', 'Sopen10g016010' => 'spe', 'Sopen11g007700' => 'spe', 'Sp1g08190' => 'spa', 'Sp1g12370' => 'spa', 'Sp1g19440' => 'spa', 'Sp1g22110' => 'spa', 'Sp2g05840' => 'spa', 'Sp2g14220' => 'spa', 'Sp2g14230' => 'spa', 'Sp2g17710' => 'spa', 'Sp3g09110' => 'spa', 'Sp5g24530' => 'spa', 'TAR362G0893' => 'tar', 'TAR374G0210' => 'tar', 'TAR376G1204' => 'tar', 'TAR381G1697' => 'tar', 'TAR622G0151' => 'tar', 'TAR626G1710' => 'tar', 'TAR628G0496' => 'tar', 'TAR628G1504' => 'tar', 'TAR629G2426' => 'tar', 'TAR629G2825' => 'tar', 'TAR633G2230' => 'tar', 'THA.LOC104801809' => 'tha', 'THA.LOC104808661' => 'tha', 'THA.LOC104813652' => 'tha', 'THA.LOC104816834' => 'tha', 'THA.LOC104820379' => 'tha', 'THA.LOC104822038' => 'tha', 'THA.LOC104823079' => 'tha', 'THA.LOC104823708' => 'tha', 'THA.LOC104825208' => 'tha', 'Thecc.02G038400' => 'tca', 'Thecc.02G340100' => 'tca', 'Thecc.04G087000' => 'tca', 'Thecc.08G122600' => 'tca', 'Thhalv10004879m.g' => 'esa', 'Thhalv10005484m.g' => 'esa', 'Thhalv10008684m.g' => 'esa', 'Thhalv10008686m.g' => 'esa', 'Thhalv10008753m.g' => 'esa', 'Thhalv10008758m.g' => 'esa', 'Thhalv10019128m.g' => 'esa', 'Thhalv10022117m.g' => 'esa', 'Thhalv10023686m.g' => 'esa', 'TPR.G16252' => 'tpr', 'TPR.G19929' => 'tpr', 'TPR.G19932' => 'tpr', 'TPR.G19943' => 'tpr', 'TPR.G19946' => 'tpr', 'TPR.G19952' => 'tpr', 'TPR.G2116' => 'tpr', 'TPR.G24560' => 'tpr', 'TPR.G24679' => 'tpr', 'TPR.G25604' => 'tpr', 'TPR.G34050' => 'tpr', 'TPR.G7103' => 'tpr', 'TPR.G8797' => 'tpr', 'TPR.G9105' => 'tpr', 'TWI12G1368' => 'twi', 'TWI14G0653' => 'twi', 'TWI23G1285' => 'twi', 'TWI31G0061' => 'twi', 'TWI34G0619' => 'twi', 'TWI34G1107' => 'twi', 'TWI36G0138' => 'twi', 'TWI59G1059' => 'twi', 'TWI60G1561' => 'twi', 'TWI79G1414' => 'twi', 'unitig_0.g904' => 'ugi', 'unitig_22.g6118' => 'ugi', 'unitig_22.g6734' => 'ugi', 'unitig_26.g10295' => 'ugi', 'unitig_749.g13217' => 'ugi', 'unitig_8.g2955' => 'ugi', 'vmacro01349' => 'vma', 'vmacro01762' => 'vma', 'vmacro18178' => 'vma', 'vmacro19895' => 'vma', 'VMungo0251G0740' => 'vmu', 'VMungo0251G3078' => 'vmu', 'VMungo0464G1458' => 'vmu', 'VMungo0540G1559' => 'vmu', 'VMungo0647G0729' => 'vmu', 'VMungo1215G2935' => 'vmu', 'VMungo1309G2164' => 'vmu', 'VMungo1383G1104' => 'vmu', 'Zm00001eb100540' => 'zma', 'Zm00001eb110070' => 'zma', 'Zm00001eb256110' => 'zma', 'Zm00001eb279060' => 'zma', 'Zm00001eb328400' => 'zma', 'Zm00001eb347810' => 'zma', 'Zm00001eb392010' => 'zma', 'Zm00001eb423560' => 'zma' ) $gf_id = 'HOM05D000760' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000760' ) $data_identifier = 'HOM05D000760' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 41, 'aar' => (int) 8, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 2, 'arhy' => (int) 12, 'ath' => (int) 10, 'atr' => (int) 2, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 39, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 3, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 4, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 10, 'dzi' => (int) 9, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 7, 'fan' => (int) 13, 'fve' => (int) 3, 'gma' => (int) 15, 'ghi' => (int) 18, 'gra' => (int) 9, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 4, 'hma' => (int) 5, 'vpl' => (int) 4, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 9, 'lonja' => (int) 6, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 16, 'nnu' => (int) 10, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 13, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 9, 'spe' => (int) 6, 'spa' => (int) 10, 'tar' => (int) 11, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 14, 'twi' => (int) 10, 'ugi' => (int) 6, 'vma' => (int) 4, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb423560' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1